{"id":18108,"date":"2022-03-18T14:30:33","date_gmt":"2022-03-18T13:30:33","guid":{"rendered":"https:\/\/www.idisantiago.es\/plataformas-de-apoyo-comun\/transcriptomica\/"},"modified":"2023-07-05T14:56:00","modified_gmt":"2023-07-05T12:56:00","slug":"transcriptomica","status":"publish","type":"page","link":"https:\/\/www.idisantiago.es\/gl\/plataformas-de-apoyo-comun\/transcriptomica\/","title":{"rendered":"Transcript\u00f3mica"},"content":{"rendered":"<p>[et_pb_section fb_built=&#8221;1&#8243; admin_label=&#8221;T\u00edtulo&#8221; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; custom_margin=&#8221;64px||0px||false|false&#8221; custom_padding=&#8221;0px||||false|false&#8221; da_disable_devices=&#8221;off|off|off&#8221; locked=&#8221;off&#8221; collapsed=&#8221;on&#8221; global_colors_info=&#8221;{}&#8221; da_is_popup=&#8221;off&#8221; da_exit_intent=&#8221;off&#8221; da_has_close=&#8221;on&#8221; da_alt_close=&#8221;off&#8221; da_dark_close=&#8221;off&#8221; da_not_modal=&#8221;on&#8221; da_is_singular=&#8221;off&#8221; da_with_loader=&#8221;off&#8221; da_has_shadow=&#8221;on&#8221;][et_pb_row _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; width=&#8221;100%&#8221; custom_padding=&#8221;0px||||false|false&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_post_title meta=&#8221;off&#8221; featured_image=&#8221;off&#8221; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][\/et_pb_post_title][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=&#8221;1&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; custom_padding=&#8221;0px||||false|false&#8221; da_disable_devices=&#8221;off|off|off&#8221; global_colors_info=&#8221;{}&#8221; da_is_popup=&#8221;off&#8221; da_exit_intent=&#8221;off&#8221; da_has_close=&#8221;on&#8221; da_alt_close=&#8221;off&#8221; da_dark_close=&#8221;off&#8221; da_not_modal=&#8221;on&#8221; da_is_singular=&#8221;off&#8221; da_with_loader=&#8221;off&#8221; da_has_shadow=&#8221;on&#8221;][et_pb_row _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; width=&#8221;100%&#8221; custom_padding=&#8221;0px||||false|false&#8221; locked=&#8221;on&#8221; collapsed=&#8221;on&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;4_4&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_text _builder_version=&#8221;4.16&#8243; _dynamic_attributes=&#8221;link_option_url&#8221; _module_preset=&#8221;default&#8221; link_option_url=&#8221;@ET-DC@eyJkeW5hbWljIjp0cnVlLCJjb250ZW50IjoicG9zdF9saW5rX3VybF9wYWdlIiwic2V0dGluZ3MiOnsicG9zdF9pZCI6Ijk1MDAifX0=@&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<p>PLATAFORMAS DE APOIO COM\u00daN<\/p>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][et_pb_row column_structure=&#8221;2_3,1_3&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; width=&#8221;100%&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_column type=&#8221;2_3&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_toggle title=&#8221;Equipamento&#8221; admin_label=&#8221;Equipamiento&#8221; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; body_font=&#8221;|300|||||||&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<p>O sistema de secuenciaci\u00f3n Masiva (Next Generation Sequencing o NGS) ten un amplio rango de aplicaci\u00f3ns, cada vez m\u00e1is numerosas, en t\u00f3dolos estudos ou proxectos de investigaci\u00f3n que impliquen an\u00e1lise de \u00e1cidos nucleicos. Na actualidade, esta plataforma est\u00e1 equipada cun equipo NextSeq 2000 System de Illumina, o cal ofrece t\u00f3dalas vantaxes desta tecnolox\u00eda punteira e coa que se est\u00e1n conseguindo resultados prometedores nos \u00faltimos anos.<\/p>\n<p>[\/et_pb_toggle][et_pb_toggle title=&#8221;Descrici\u00f3n&#8221; admin_label=&#8221;Descripci\u00f3n&#8221; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; body_font=&#8221;|300|||||||&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<p>A tecnolox\u00eda que utiliza o NextSeq2000 de Illumina bas\u00e9ase na secuenciaci\u00f3n por s\u00edntese (SBS), onde o seguemento dos nucle\u00f3tidos marcados l\u00e9vase a cabo de maneira simult\u00e1nea \u00e1 copia da cadea de ADN.<\/p>\n<p>\u200b<img loading=\"lazy\" decoding=\"async\" class=\"wp-image-15431 alignnone size-full\" src=\"https:\/\/www.idisantiago.es\/wp-content\/uploads\/2022\/03\/sequencing_genvip.jpg\" alt=\"\" width=\"202\" height=\"130\" \/><\/p>\n<p>Esta tecnolox\u00eda permite secuenciar mill\u00f3ns de fragmentos de forma masiva e en paralelo, mellorando a velocidade e a precisi\u00f3n de secuenciaci\u00f3n ao tiempo que reduce o seu coste.<\/p>\n<p>O sistema de secuenciaci\u00f3n Illumina NextSeq 2000 foi provisto cun novedoso sistema \u00f3ptico de s\u00faper resoluci\u00f3n que produce datos de imaxes de alta precisi\u00f3n cunha maior resoluci\u00f3n e sensibilidade que os sistemas de Illumina m\u00e1is tradicionais.<\/p>\n<p>Esta tecnolox\u00eda proporciona adem\u00e1is maior flexibilidade de secuenciaci\u00f3n, escalable a diferentes necesidades experimentais de produci\u00f3n, e adaptable a aplicaci\u00f3ns tanto convencionais como emerxentes.<br \/>(Video <strong><span style=\"color: #808000;\"><a style=\"color: #808000;\" href=\"https:\/\/youtu.be\/fCd6B5HRaZ8\">https:\/\/youtu.be\/fCd6B5HRaZ8<\/a><\/span><\/strong>)<\/p>\n<p>A flexibilidade da tecnolox\u00eda fai que a plataforma sexa adaptable a unha ampla gama de aplicaci\u00f3ns e aplicable a proxectos con obxectivos de secuenciaci\u00f3n diversos:<\/p>\n<p><strong>Secuenciaci\u00f3n de transcriptoma<\/strong><\/p>\n<p>O sistema Nextseq 2000 ofrece unha gran flexibilidade para os estudos de secuenciaci\u00f3n de ARN, que requiren diferentes profundidades de secuenciaci\u00f3n e lonxitudes de lectura dependendo da complexidade, o tama\u00f1o e os obxectivos do estudo:<\/p>\n<p>\u2022 Secuenciaci\u00f3n de ARN total. Analiza as rexi\u00f3ns codificantes e m\u00faltiples formas de ARN non codificante para obter unha imaxe completa do transcriptoma.<\/p>\n<p>\u2022 Secuenciaci\u00f3n de ARNm. Detecta e cuantifica transcriptos novos e co\u00f1ecidos para obter perfiles de expresi\u00f3n completos e precisos.<\/p>\n<p>\u2022 Perfiles de expresi\u00f3n x\u00e9nica. Permite secuenciar conxuntamente m\u00faltiples librer\u00edas de ARN nunha \u00fanica carreira de secuenciaci\u00f3n obtendo unha imaxe r\u00e1pida dos xenes m\u00e1is expresados \u200b\u200bcon s\u00f3 unhas poucas lecturas por mostra.<\/p>\n<p>\u2022 Secuenciaci\u00f3n de ARN dirixida. Seleciona e secuencia transcriptos de interese espec\u00edfico para estudos de perfiles de expresi\u00f3n x\u00e9nica.<\/p>\n<p>\u2022 Secuenciaci\u00f3n de ARN pequeno (ARNs) e MicroARN (miARN). Permite consultar miles de secuencias de ARNs e microARN cunha alta sensibilidade.<\/p>\n<p><strong>Secuenciaci\u00f3n do exoma humano e xenoma de microorganismos<\/strong><\/p>\n<p>\u2022 Secuenciaci\u00f3n de xenomas pequenos. Secuencia o xenoma completo dunha bacteria, virus ou outro microbio.<\/p>\n<p>\u2022 Secuenciaci\u00f3n do exoma humano. Captura e secuencia a rexi\u00f3n codificante das prote\u00ednas do xenoma, unha alternativa rentable \u00e1 secuenciaci\u00f3n do xenoma completo.<\/p>\n<p><strong>Secuenciaci\u00f3n de paneis dirixidos<\/strong><\/p>\n<p>Os paneis de xenes dirixidos e de expresi\u00f3n x\u00e9nica dirixida secuencian soamente rexi\u00f3ns xen\u00f3micas ou transcript\u00f3micas de interese. Son ferramentas \u00fatiles para analizar mutaci\u00f3ns espec\u00edficas, carga mutacional, inestabilidade de microsat\u00e9lites, xenotipado de HLA, expresi\u00f3n do repertorio TCR ou de perfiles de fusi\u00f3ns x\u00e9nicas\u2026.<\/p>\n<p>As aplicaci\u00f3ns da secuenciaci\u00f3n de paneis dirixidos incl\u00faen:<\/p>\n<p>\u2022 Secuenciaci\u00f3n xen\u00f3mica personalizada. Seleci\u00f3n e secuenciaci\u00f3n de rexi\u00f3ns espec\u00edficas do xenoma que te\u00f1en un interese de investigaci\u00f3n espec\u00edfico: por exemplo, rutas biol\u00f3xicas espec\u00edficas ou experimentos de seguemento de estudos de asociaci\u00f3n de todo o xenoma ou secuenciaci\u00f3n de xenoma completo.<\/p>\n<p>\u2022 Paneis predise\u00f1ados para a secuenciaci\u00f3n de xenes dirixidos. Conte\u00f1en rexi\u00f3ns xen\u00f3micas fixas ou xenes asociados cunha enfermidade, un fenotipo ou unha ruta biol\u00f3xica. Est\u00e1n dispo\u00f1ibles para a investigaci\u00f3n de diversas enfermidades como c\u00e1ncer, trastornos hereditarios, trastornos raros, trastornos card\u00edacos, trastornos neurol\u00f3xicos, enfermidades inmunitarias, etc.<\/p>\n<p><strong>Outras aplicaci\u00f3ns posibles<\/strong><\/p>\n<p>-Secuenciaci\u00f3n de ADN libre circulante e an\u00e1lise de biopsia l\u00edquida<br \/>-An\u00e1lise da cromatina (ChIP-Seq, ATAC-Seq)<br \/>-Secuenciaci\u00f3n da metilaci\u00f3n de ADN<br \/>-Secuenciaci\u00f3n do ARN ribos\u00f3mico (ARNr) 16S e do espaciador transcrito interno (ITS)<br \/>-Perfiles metaxen\u00f3micos (metaxen\u00f3mica, metatranscript\u00f3mica)<br \/>-Secuenciaci\u00f3n de ADN e ARN de c\u00e9lula \u00fanica<\/p>\n<p>[\/et_pb_toggle][et_pb_toggle title=&#8221;Servizos&#8221; admin_label=&#8221;Servicios&#8221; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; body_font=&#8221;|300|||||||&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<p>O noso servizo incl\u00fae t\u00f3dalas etapas de soporte que necesite o teu proxecto, dende a consultor\u00eda e asesoramento experimental, ata o apoio t\u00e9cnico para o desenvolvemento de protocolos de secuenciaci\u00f3n, a xesti\u00f3n de materiais, as an\u00e1lises das mostras e o correspondente an\u00e1lise de datos bioinform\u00e1ticos para a s\u00faa publicaci\u00f3n. <strong>Asesoramento experimental<\/strong> A nosa plataforma de secuenciaci\u00f3n proporciona asesoramento experimental para unha amplia variedade de proxectos de investigaci\u00f3n que requiran: \u2022 Secuenciaci\u00f3n de ARN total \u2022 Secuenciaci\u00f3n de ARNm \u2022 Secuenciaci\u00f3n de pequenos ARNs e miARN \u2022 Perf\u00eds de expresi\u00f3n xen\u00e9tica \u2022 Secuenciaci\u00f3n completa de pequenos xenomas \u2022Secuenciaci\u00f3n do exoma humano completo (baseada na tecnolox\u00eda de enriquecemento) \u2022 Secuenciaci\u00f3n de paneis de xenes espec\u00edficos (baseados na tecnolox\u00eda de enriquecemento ou de amplic\u00f3ns de PCR) \u2022 Secuenciaci\u00f3n de ADNct, Chip-Seq, ATAQ-seq e calquera outra aplicaci\u00f3n xen\u00f3mica, con previa avaliaci\u00f3n da solicitude. <strong>Apoio t\u00e9cnico<\/strong> Ofrecemos soporte t\u00e9cnico para o completo desenvolvemento do protocolo de secuenciaci\u00f3n: \u2022 Dese\u00f1o experimental de proxectos de secuenciaci\u00f3n \u2022 Extracci\u00f3n de \u00e1cidos nucleicos de diferentes tipos de mostras: sangue, saliva, oso ou tecido incrustado en parafina fixado con formalina (FFPE). \u2022 Control de calidade e integridade das mostras \u2022 Preparaci\u00f3n e control de calidade das librer\u00edas de NGS \u2022 Secuenciaci\u00f3n das librer\u00edas de NGS <strong>Xesti\u00f3n de materiais<\/strong> Proporcionamos a xesti\u00f3n e pedido dos reactivos necesarios para a preparaci\u00f3n das librer\u00edas de NGS, celas de fluxo e cartuchos para a aplicaci\u00f3n de secuenciaci\u00f3n requerida. <strong>An\u00e1lises de datos bioinform\u00e1ticos<\/strong> Entregamos os resultados en formatos de arquivo de secuenciaci\u00f3n que conte\u00f1en os datos sen procesar e ofrecemos procesamento e an\u00e1lises especializados de datos NGS: control de calidade, de-multiplexaci\u00f3n, ali\u00f1amento e an\u00e1lises posteriores.<\/p>\n<p>[\/et_pb_toggle][et_pb_toggle title=&#8221;Tarifas&#8221; disabled_on=&#8221;off|off|off&#8221; admin_label=&#8221;Tarifas&#8221; _builder_version=&#8221;4.21.0&#8243; _module_preset=&#8221;default&#8221; body_font=&#8221;|300|||||||&#8221; hover_enabled=&#8221;0&#8243; global_colors_info=&#8221;{}&#8221; sticky_enabled=&#8221;0&#8243;]<\/p>\n<p><span style=\"color: #808000;\"><strong><a style=\"color: #808000;\" href=\"https:\/\/www.idisantiago.es\/wp-content\/uploads\/2022\/10\/TARIFAS.Transcriptomics.JUN23.pdf\">Tarifas<\/a><\/strong><\/span><\/p>\n<p>IVE non inclu\u00eddo<\/p>\n<p>[\/et_pb_toggle][\/et_pb_column][et_pb_column type=&#8221;1_3&#8243; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;][et_pb_text admin_label=&#8221;Contacto&#8221; _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; text_text_color=&#8221;#FFFFFF&#8221; header_text_color=&#8221;#FFFFFF&#8221; header_2_text_align=&#8221;left&#8221; header_2_text_color=&#8221;#FFFFFF&#8221; background_color=&#8221;#10294c&#8221; custom_margin=&#8221;0px||||false|false&#8221; custom_padding=&#8221;6px||0px|6px|false|false&#8221; locked=&#8221;on&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<h2>Contacto<\/h2>\n<p>[\/et_pb_text][et_pb_text _builder_version=&#8221;4.16&#8243; _module_preset=&#8221;default&#8221; global_colors_info=&#8221;{}&#8221;]<\/p>\n<p><b>Isabel Ferreir\u00f3s Vidal <\/b><\/p>\n<p><span style=\"color: #0563c1;\"><u><a href=\"mailto:Isabel.Ferreiros.Vidal@sergas.es\"><span style=\"font-family: Segoe UI, serif;\"><span style=\"font-size: small;\">Isabel.Ferreiros.Vidal@sergas.es<\/span><\/span><\/a><\/u><\/span><\/p>\n<h6>\u200b<\/h6>\n<p>[\/et_pb_text][\/et_pb_column][\/et_pb_row][\/et_pb_section][et_pb_section fb_built=&#8221;1&#8243; admin_label=&#8221;Logos_internas&#8221; _builder_version=&#8221;4.14.7&#8243; _module_preset=&#8221;default&#8221; background_color=&#8221;RGBA(255,255,255,0)&#8221; custom_margin=&#8221;5px|||||&#8221; custom_padding=&#8221;27px||0px|||&#8221; da_disable_devices=&#8221;off|off|off&#8221; 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